ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 1008.00 20.74 3.32 59.02 MIR194-2HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 2601.00 29.33 8.57 100.0 LINC01783-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 308.00 99.68 1.02 100.0 RPS7P15-201 processed pseudogene esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 278.00 7.17 0.92 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 9.00 0.23 0.03 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1055.00 27.23 3.48 95.48 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1469.00 37.91 4.84 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 84.00 2.17 0.28 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 480.00 98.36 1.58 100.0 MRPL32-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 21.00 70.00 0.07 100.0 ENST00000436739 lncRNA esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 80.00 2.11 0.26 100.0 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 7.00 0.18 0.02 41.18 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 745.00 19.61 2.46 75.1 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1118.00 29.42 3.69 100.0 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1385.00 63.50 4.57 91.66 SNHG16-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 369.00 16.92 1.22 100.0 SNHG16-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 2.00 7.41 0.01 100.0 SNHG14-207 lncRNA esophagus squamous epithelium (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 32647.00 93.77 107.62 97.82 SNORD105B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 1027.00 46.22 3.39 58.22 SNORD121B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 65171.00 97.35 214.83 99.32 SNORD127-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 13.00 0.02 0.04 100.0 SNORD127-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 17486.00 94.75 57.64 100.0 SNORD42B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 24.00 0.15 0.08 100.0 RNY4P25-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 705.00 74.05 2.32 100.0 SNORD121A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 2657.00 74.26 8.76 93.66 SNORD126-201 snoRNA esophagus squamous epithelium (Tissue)