ENCFF450POH

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 293.47 0.61 2.27 71.58 RPL23A-208 retained intron GM23338 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 120.64 0.25 0.93 41.74 RPL23A-208 retained intron GM23338 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 11515.00 24.06 89.04 45.78 RPL23A-208 retained intron GM23338 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 35069.00 73.28 271.17 93.81 RPL23A-208 retained intron GM23338 (Cell line)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 4.00 7.27 0.03 100.0 MIR133A1HG-202 lncRNA GM23338 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 180.00 0.38 1.39 8.7 RPL17-211 retained intron GM23338 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 162.00 0.35 1.25 28.17 RPL17-211 retained intron GM23338 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 392.00 0.84 3.03 100.0 RPL17-211 retained intron GM23338 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 32094.00 68.58 248.16 99.65 RPL17-211 retained intron GM23338 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 10787.00 23.05 83.41 99.25 RPL17-211 retained intron GM23338 (Cell line)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 5.00 62.50 0.04 100.0 ENST00000582320 lncRNA GM23338 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1302.00 15.40 10.07 100.0 RPL17-214 retained intron GM23338 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 1190.87 14.09 9.21 26.86 RPL17-214 retained intron GM23338 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 3967.68 46.94 30.68 70.79 RPL17-214 retained intron GM23338 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 10.00 0.01 0.08 100.0 SNORD43-201 snoRNA GM23338 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 146951.00 98.72 1136.28 99.77 SNORD43-201 snoRNA GM23338 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 55.00 0.04 0.43 100.0 SNORD43-201 snoRNA GM23338 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 56.00 82.35 0.43 100.0 MIR151B-201 miRNA GM23338 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 439.00 1.87 3.39 100.0 SNORD3A-201 snoRNA GM23338 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 52.00 11.50 0.40 100.0 SNORD92-201 snoRNA GM23338 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1703.00 44.27 13.17 100.0 NSRP1-214 protein coding GM23338 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1551.00 40.32 11.99 86.89 NSRP1-214 protein coding GM23338 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 7.00 1.25 0.05 100.0 MIR23AHG-201 lncRNA GM23338 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 41.00 7.30 0.32 70.69 MIR23AHG-201 lncRNA GM23338 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 117.00 20.82 0.90 87.31 MIR23AHG-201 lncRNA GM23338 (Cell line)