ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1710.00 56.62 8.50 100.0 HCN2-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 3.00 10.71 0.01 100.0 SLC49A4-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 4.00 1.21 0.02 100.0 ATP5MC3-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 2602.00 95.91 12.94 100.0 CDC25A-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 1048.00 76.50 5.21 100.0 RUNX3-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 306.00 36.08 1.52 100.0 BLOC1S4-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 2343.00 56.21 11.65 100.0 ATAD5-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 210.00 34.15 1.04 100.0 SLITRK5-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 6975.00 58.70 34.68 100.0 HASPIN-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 206.00 98.10 1.02 100.0 ATG101-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 41.00 69.49 0.20 100.0 PRICKLE1-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 371.00 98.41 1.84 100.0 MIR133A2-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 339.00 30.13 1.69 100.0 PBLD-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 88620.00 79.62 440.64 98.15 MIRLET7BHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 15260.00 13.71 75.88 85.8 MIRLET7BHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 474.00 2.01 2.36 79.8 MIR375-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 22976.00 97.28 114.24 99.57 MIR375-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 1437.00 21.34 7.15 100.0 MIR30E-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 4812.00 71.45 23.93 100.0 MIR30E-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 417.00 43.03 2.07 100.0 MIR29A-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 250.00 89.29 1.24 100.0 MIR345-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 11301.00 98.92 56.19 100.0 MIR16-2-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 9.00 2.32 0.04 100.0 MIR340-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 370.00 95.36 1.84 100.0 MIR340-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 342.00 61.29 1.70 100.0 MIR107-201 miRNA esophagus squamous epithelium (Tissue)