ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 155.00 17.71 0.77 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 97.00 12.56 0.48 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 28.00 0.09 0.14 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 104.00 0.33 0.52 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 96.00 0.30 0.48 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 586.00 1.86 2.91 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 683.00 2.17 3.40 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 30.00 0.10 0.15 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 4037.00 1.86 20.07 97.61 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 300.00 0.14 1.49 59.41 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 189.00 0.09 0.94 64.07 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 1324.00 4.78 6.58 76.18 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 868.00 88.57 4.32 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 555.00 24.72 2.76 62.5 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 57.00 86.36 0.28 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 54.00 0.10 0.27 39.13 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 84.00 0.16 0.42 60.87 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 27362.00 51.61 136.05 96.35 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 917.63 16.89 4.56 67.47 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 600.00 11.04 2.98 73.62 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 426.90 7.86 2.12 33.27 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 22030.00 87.36 109.54 96.99 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 92.00 1.84 0.46 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 830.00 10.03 4.13 57.36 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA esophagus squamous epithelium (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 720.00 0.72 3.58 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA esophagus squamous epithelium (Tissue)