ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 2725.57 29.34 13.55 35.87 ENST00000797550 lncRNA esophagus squamous epithelium (Tissue)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 225.00 2.42 1.12 73.53 ENST00000797550 lncRNA esophagus squamous epithelium (Tissue)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 30799.00 82.06 153.14 92.49 MIR181A1HG-212 lncRNA esophagus squamous epithelium (Tissue)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 83.00 0.22 0.41 100.0 MIR181A1HG-212 lncRNA esophagus squamous epithelium (Tissue)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 2068.00 45.08 10.28 100.0 C19orf48P-218 lncRNA esophagus squamous epithelium (Tissue)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 1678.00 36.58 8.34 100.0 C19orf48P-218 lncRNA esophagus squamous epithelium (Tissue)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 1839.00 62.49 9.14 88.84 SNHG18-220 lncRNA esophagus squamous epithelium (Tissue)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 444.00 14.67 2.21 100.0 ENST00000817026 lncRNA esophagus squamous epithelium (Tissue)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 461.47 1.75 2.29 30.3 ENST00000823279 lncRNA esophagus squamous epithelium (Tissue)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 45.00 0.17 0.22 100.0 ENST00000823279 lncRNA esophagus squamous epithelium (Tissue)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 427.26 1.62 2.12 57.2 ENST00000823279 lncRNA esophagus squamous epithelium (Tissue)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 721.38 2.74 3.59 64.18 ENST00000823279 lncRNA esophagus squamous epithelium (Tissue)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 163.00 0.62 0.81 100.0 ENST00000823279 lncRNA esophagus squamous epithelium (Tissue)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 4394.00 16.66 21.85 99.46 ENST00000823279 lncRNA esophagus squamous epithelium (Tissue)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 509.13 1.93 2.53 44.74 ENST00000823279 lncRNA esophagus squamous epithelium (Tissue)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 316.00 1.20 1.57 82.72 ENST00000823279 lncRNA esophagus squamous epithelium (Tissue)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 248.35 0.94 1.23 17.16 ENST00000823279 lncRNA esophagus squamous epithelium (Tissue)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 1435.79 5.44 7.14 75.41 ENST00000823801 lncRNA esophagus squamous epithelium (Tissue)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 498.00 63.76 2.48 80.19 ENST00000827714 lncRNA esophagus squamous epithelium (Tissue)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 123.00 15.75 0.61 19.81 ENST00000827714 lncRNA esophagus squamous epithelium (Tissue)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 15684.00 8.55 77.98 100.0 GAS5-377 lncRNA esophagus squamous epithelium (Tissue)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 48.00 0.03 0.24 100.0 GAS5-377 lncRNA esophagus squamous epithelium (Tissue)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 1188.00 0.65 5.91 100.0 GAS5-377 lncRNA esophagus squamous epithelium (Tissue)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 163378.00 89.01 812.35 100.0 GAS5-377 lncRNA esophagus squamous epithelium (Tissue)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 18761.00 91.60 93.28 100.0 MIR205HG-245 lncRNA esophagus squamous epithelium (Tissue)