ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 113476.00 9.90 564.23 90.7 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 3.00 0.00 0.01 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 76516.00 6.67 380.45 98.48 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 39.00 0.00 0.19 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 16.00 0.00 0.08 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 9560.00 0.83 47.53 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 583.00 0.05 2.90 88.6 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 296.19 0.03 1.47 41.66 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 781.00 0.07 3.88 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 286.00 0.02 1.42 60.98 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 437.00 0.04 2.17 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 75.00 0.01 0.37 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 694.00 0.06 3.45 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 2407.00 38.36 11.97 100.0 SNHG14-315 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 1471.00 23.44 7.31 92.69 SNHG14-315 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 1333.00 21.24 6.63 81.43 SNHG14-315 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 856.00 0.13 4.26 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 293448.08 44.97 1459.09 51.01 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 111.00 0.02 0.55 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 53.00 0.01 0.26 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 337517.35 51.73 1678.21 54.59 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 11224.00 1.72 55.81 86.67 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 949.00 0.15 4.72 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3002.00 0.46 14.93 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 440.00 0.07 2.19 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)