ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 88.00 63.31 0.44 100.0 MEG8-242 lncRNA esophagus squamous epithelium (Tissue)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 67.95 17.88 0.34 32.51 SNHG14-312 lncRNA esophagus squamous epithelium (Tissue)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 128.22 33.74 0.64 61.35 SNHG14-312 lncRNA esophagus squamous epithelium (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 22.00 0.16 0.11 100.0 MEG8-244 lncRNA esophagus squamous epithelium (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 51.00 0.37 0.25 100.0 MEG8-244 lncRNA esophagus squamous epithelium (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 13450.00 97.81 66.88 99.18 MEG8-244 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 682.00 0.06 3.39 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 31.00 0.00 0.15 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 6723.00 0.59 33.43 99.09 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 417.31 0.04 2.07 58.69 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 961.00 0.08 4.78 91.09 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 208237.00 18.16 1035.40 99.52 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 417.00 0.04 2.07 67.04 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 64048.00 5.59 318.46 99.69 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 4819.00 0.42 23.96 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 564952.00 49.27 2809.06 99.85 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 189.00 0.02 0.94 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 178.00 0.02 0.89 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 719.00 0.06 3.58 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 227.00 0.02 1.13 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 244.00 0.02 1.21 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 354.00 0.03 1.76 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 45515.00 3.97 226.31 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 306.00 0.03 1.52 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 596.00 0.05 2.96 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)