ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 173.00 3.36 0.86 69.48 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 5165.98 5.98 25.69 48.66 5S_rRNA.20-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 2513.00 8.73 12.50 100.0 HSPA9-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 16870.00 58.60 83.88 78.2 HSPA9-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 2146.00 43.05 10.67 100.0 DNM3OS-205 lncRNA esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 192.00 0.07 0.95 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 3782.00 1.31 18.80 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 177.00 0.06 0.88 58.22 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 32334.00 11.19 160.77 96.43 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 132.00 0.05 0.66 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 36.00 0.01 0.18 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 91.00 0.03 0.45 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 144224.00 49.93 717.11 99.82 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 565.00 0.20 2.81 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 12181.00 4.22 60.57 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 5440.00 1.88 27.05 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1052.00 0.36 5.23 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 9671.00 3.35 48.09 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 23.00 0.01 0.11 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 496.00 0.17 2.47 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 490.00 0.17 2.44 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 6892.00 2.39 34.27 82.45 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 5888.00 2.04 29.28 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 2073.00 0.72 10.31 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 1009.00 0.35 5.02 90.9 GAS5-230 retained intron esophagus squamous epithelium (Tissue)