ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 740.00 7.71 3.68 63.36 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 2.00 33.33 0.01 100.0 MIR122HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 11103.00 74.60 55.21 100.0 ODAD3-204 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 2807.00 4.04 13.96 100.0 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 1122.00 1.61 5.58 100.0 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 47010.00 67.59 233.74 75.84 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1215.00 0.05 6.04 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1584253.94 61.79 7877.25 64.71 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 922500.59 35.98 4586.87 36.41 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 10431.00 0.41 51.87 92.02 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 532.00 0.02 2.65 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 22.00 0.00 0.11 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 1377.00 41.41 6.85 100.0 RPS11-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 1493.00 44.90 7.42 100.0 RPS11-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1324857.00 80.47 6587.48 81.56 CARMN-209 lncRNA esophagus squamous epithelium (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2078.00 53.24 10.33 100.0 ENST00000602478 lncRNA esophagus squamous epithelium (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 371.00 45.92 1.84 100.0 PPFIA1P1-201 processed pseudogene esophagus squamous epithelium (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 320.00 49.84 1.59 100.0 SNORD114-21-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 234.00 36.45 1.16 100.0 SNORD114-21-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 1369.00 94.74 6.81 100.0 MIR98-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 872.00 93.97 4.34 100.0 SNORD113-5-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 215.00 86.69 1.07 100.0 MIR15A-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 2.00 100.00 0.01 100.0 MIR376C-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 201.00 44.08 1.00 100.0 SNHG21-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 8901.00 96.01 44.26 100.0 SNORD11B-201 snoRNA esophagus squamous epithelium (Tissue)