ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 147717.00 73.14 734.48 82.78 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 52911.00 26.20 263.08 89.56 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 3.00 0.78 0.01 100.0 MIR133A1HG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 1772.00 2.29 8.81 69.38 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 2523.00 3.25 12.54 18.61 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 184.00 0.24 0.91 100.0 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 65282.00 84.21 324.60 98.89 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 5703.00 7.36 28.36 97.02 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 9.00 18.75 0.04 22.5 ENST00000582320 lncRNA esophagus squamous epithelium (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 2.00 4.17 0.01 100.0 ENST00000582320 lncRNA esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 5372.00 14.21 26.71 100.0 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 17478.03 46.25 86.90 58.6 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 12926.73 34.20 64.27 41.96 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 6.00 0.00 0.03 100.0 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 834118.00 99.46 4147.42 99.85 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 65.00 0.01 0.32 100.0 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 58.00 37.18 0.29 100.0 MIR151B-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 933.00 7.36 4.64 100.0 SNORD3A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 6387.00 82.15 31.76 100.0 SNORD92-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2986.00 22.55 14.85 100.0 NSRP1-214 protein coding esophagus squamous epithelium (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 8236.00 62.19 40.95 89.56 NSRP1-214 protein coding esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 1702.00 17.73 8.46 100.0 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1208.00 12.58 6.01 91.24 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 2203.00 22.94 10.95 82.48 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1958.00 20.39 9.74 91.32 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)