ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 650.00 90.78 3.23 100.0 MIR152-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 3.00 42.86 0.01 100.0 MIR138-1-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 1148.00 88.92 5.71 100.0 MIR30C1-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 50.00 79.37 0.25 100.0 MIR660-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 4972.00 66.17 24.72 83.17 MIR125B1-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 409.00 5.44 2.03 100.0 MIR125B1-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385254.3 ENST00000385254.3_57_78_+ 57–78 11.00 68.75 0.05 100.0 MIR493-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 2.00 12.50 0.01 100.0 MIR493-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 42635.97 56.26 212.00 61.01 MIR182-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 9062.07 11.96 45.06 20.5 MIR182-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 8120.00 89.66 40.37 92.09 MIR100-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 193.00 91.04 0.96 100.0 MIR301A-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 673.00 26.72 3.35 62.72 MIR130A-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 1827.00 72.53 9.08 86.3 MIR130A-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 83764.00 98.49 416.49 99.14 MIRLET7F2-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 67.00 74.44 0.33 100.0 MIR652-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 1.00 100.00 0.00 100.0 MIR653-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 941.00 68.04 4.68 100.0 MIR140-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 22.00 9.32 0.11 100.0 MIR106B-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 64.00 27.12 0.32 64.0 MIR106B-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 81145.00 61.20 403.47 98.29 SNORD83A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 47910.00 36.14 238.22 96.93 SNORD83A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 713.00 73.20 3.55 100.0 SNORD41-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 78.00 3.55 0.39 100.0 MT-TF-201 Mt tRNA esophagus squamous epithelium (Tissue)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 109.00 4.95 0.54 63.74 MT-TF-201 Mt tRNA esophagus squamous epithelium (Tissue)