ENCFF000JJB

Library Details

Organism: Homo Sapiens
Biosample: hair follicle dermal papilla cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVC
Description: Part of ENCODE experiment ENCSR000CVC. The libraries contained in this experiment come from hair follicle dermal papilla primary whole cells, HFDPC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 545.00 45.12 28.96 89.2 RNU5A-1-201 snRNA hair follicle dermal papilla cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 33.89 2.81 1.80 36.06 RNU5A-1-201 snRNA hair follicle dermal papilla cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1.00 0.08 0.05 100.0 RNU5A-1-201 snRNA hair follicle dermal papilla cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 68.71 5.69 3.65 22.98 RNU5A-1-201 snRNA hair follicle dermal papilla cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 14.00 1.04 0.74 100.0 7SK.1-201 misc RNA hair follicle dermal papilla cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 578.00 43.13 30.71 100.0 7SK.1-201 misc RNA hair follicle dermal papilla cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 9.00 0.65 0.48 100.0 SNORD83A-201 snoRNA hair follicle dermal papilla cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1563.00 59.20 83.04 100.0 SNORD12B-201 snoRNA hair follicle dermal papilla cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 672.00 25.45 35.70 100.0 SNORD12B-201 snoRNA hair follicle dermal papilla cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 6584.00 85.41 349.80 100.0 SNHG3-202 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 1831.00 66.70 97.28 100.0 SNORD124-201 snoRNA hair follicle dermal papilla cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2607.00 54.72 138.51 68.73 RPL3-212 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 700.00 1.68 37.19 100.0 RPL13A-212 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 1.00 0.00 0.05 100.0 RPL13A-212 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 38024.00 90.99 2020.16 100.0 RPL13A-212 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 16720.00 64.33 888.31 100.0 RPL7A-207 protein coding CDS not defined hair follicle dermal papilla cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 6756.00 25.99 358.94 100.0 RPL7A-207 protein coding CDS not defined hair follicle dermal papilla cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 8.00 0.10 0.43 100.0 RABGGTB-213 protein coding CDS not defined hair follicle dermal papilla cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 3308.00 41.62 175.75 100.0 RABGGTB-213 protein coding CDS not defined hair follicle dermal papilla cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1296.00 16.30 68.85 100.0 RABGGTB-213 protein coding CDS not defined hair follicle dermal papilla cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 69.00 0.02 3.67 100.0 RPL5-205 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 308370.00 98.36 16383.25 99.38 RPL5-205 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 368.00 22.52 19.55 100.0 RACK1-230 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 84569.00 88.95 4493.03 100.0 SNHG6-204 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 6112.00 6.43 324.72 100.0 SNHG6-204 retained intron hair follicle dermal papilla cell (Primary cell)