ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 2326.00 5.02 11.47 100.0 GAS5-377 lncRNA spleen (Tissue)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 42350.00 91.39 208.93 100.0 GAS5-377 lncRNA spleen (Tissue)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 1.00 50.00 0.00 100.0 MIR205HG-245 lncRNA spleen (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 59.00 1.13 0.29 100.0 ZFAS1-238 lncRNA spleen (Tissue)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 7.00 0.13 0.03 100.0 ZFAS1-238 lncRNA spleen (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 87.00 1.67 0.43 100.0 ZFAS1-238 lncRNA spleen (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 2082.00 39.88 10.27 100.0 ZFAS1-238 lncRNA spleen (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 9789.00 90.66 48.29 100.0 ZFAS1-242 lncRNA spleen (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 229.00 36.76 1.13 100.0 ENST00000837997 lncRNA spleen (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 188.00 30.18 0.93 100.0 ENST00000837997 lncRNA spleen (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 2422.00 70.43 11.95 78.05 ENST00000839036 lncRNA spleen (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 12.00 7.64 0.06 100.0 ENST00000849527 lncRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 43629.00 92.39 215.24 98.59 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 18.00 0.04 0.09 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 165.00 0.01 0.81 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 1070.00 32.36 5.28 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 1849.00 55.91 9.12 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 105.00 14.50 0.52 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 124.00 2.96 0.61 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 247.00 23.08 1.22 50.93 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 159.00 0.01 0.78 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 1458.00 11.05 7.19 86.99 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 17.00 0.13 0.08 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 1750.00 13.27 8.63 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 372.00 24.30 1.84 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA spleen (Tissue)