ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 285.00 10.84 1.41 100.0 RPL7A-207 protein coding CDS not defined spleen (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 812.00 30.90 4.01 100.0 RPL7A-207 protein coding CDS not defined spleen (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 82.00 83.67 0.40 100.0 RGS11-208 retained intron spleen (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 9397.00 78.52 46.36 95.24 NOP56-217 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 1029.00 3.83 5.08 59.79 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 3646.00 13.58 17.99 100.0 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 464.00 1.73 2.29 100.0 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 5918.00 22.04 29.20 100.0 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 692.00 2.58 3.41 40.21 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 5781.00 21.53 28.52 89.5 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 3618.00 80.87 17.85 100.0 GNL3-211 retained intron spleen (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 497.00 11.11 2.45 100.0 GNL3-211 retained intron spleen (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 172.00 53.58 0.85 100.0 RPL5-205 retained intron spleen (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 55.00 1.09 0.27 100.0 ZBED9-AS1-201 lncRNA spleen (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3230.00 93.19 15.93 100.0 RPS3A-206 retained intron spleen (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 13666.00 97.70 67.42 100.0 COX7C-203 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 12169.53 17.10 60.04 31.3 RACK1-229 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 37136.45 52.18 183.21 77.92 RACK1-229 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 14135.00 19.86 69.73 99.84 RACK1-229 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 3386.00 4.76 16.70 100.0 RACK1-229 protein coding spleen (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 172.00 6.18 0.85 100.0 RACK1-230 retained intron spleen (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 219.00 1.94 1.08 100.0 RNA5SP486-201 rRNA pseudogene spleen (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 3991.00 89.48 19.69 100.0 SCARNA5-201 scaRNA spleen (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 1030.00 0.47 5.08 100.0 RNY4-201 misc RNA spleen (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 151.00 0.07 0.74 53.55 RNY4-201 misc RNA spleen (Tissue)