ENCFF381DXM

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR168XPO
Description: Part of ENCODE experiment ENCSR168XPO. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 14.00 0.25 0.05 100.0 MIR222HG-206 lncRNA transverse colon (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 1291.00 68.78 5.01 100.0 RPSA-216 retained intron transverse colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 472.00 4.06 1.83 79.46 MIR99AHG-370 lncRNA transverse colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 10579.00 91.00 41.08 98.48 MIR99AHG-370 lncRNA transverse colon (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 881.00 97.24 3.42 100.0 HPS4-237 retained intron transverse colon (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 29.00 72.50 0.11 100.0 MEG8-253 lncRNA transverse colon (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 14.00 3.69 0.05 100.0 MEG9-206 lncRNA transverse colon (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 133.00 35.09 0.52 100.0 MEG9-206 lncRNA transverse colon (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1248.00 11.53 4.85 100.0 DNAJC5-203 nonsense mediated decay transverse colon (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 4422.00 28.34 17.17 100.0 ENST00000707189 TEC transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 6.00 0.01 0.02 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 17.00 0.02 0.07 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 42097.56 49.24 163.46 53.82 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 108.00 0.13 0.42 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 40159.18 46.97 155.94 51.54 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 1355.00 1.58 5.26 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 117.00 0.14 0.45 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 75.00 0.09 0.29 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 227.00 0.27 0.88 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 10363.00 3.59 40.24 100.0 SNHG32-223 lncRNA transverse colon (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 677.00 0.23 2.63 100.0 SNHG32-223 lncRNA transverse colon (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 149.00 0.05 0.58 100.0 SNHG32-223 lncRNA transverse colon (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 4521.00 1.56 17.55 79.6 SNHG32-223 lncRNA transverse colon (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 269559.00 93.31 1046.69 100.0 SNHG32-223 lncRNA transverse colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 42197.00 93.34 163.85 99.32 SNHG32-227 lncRNA transverse colon (Tissue)