ENCFF381DXM

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR168XPO
Description: Part of ENCODE experiment ENCSR168XPO. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 989.00 0.12 3.84 56.45 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2950.00 0.34 11.45 42.67 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 128349.00 15.00 498.38 89.6 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 6307.00 94.30 24.49 100.0 RPS8-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 124.00 16.10 0.48 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 201.00 26.10 0.78 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 119.00 15.45 0.46 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 779.00 0.08 3.02 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 639956.00 66.64 2484.93 99.89 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 2647.00 0.28 10.28 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 300853.00 31.33 1168.21 95.52 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 287.00 0.03 1.11 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 58.00 16.57 0.23 100.0 GABRE-209 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 1011.00 1.21 3.93 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 64.00 0.08 0.25 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 27.00 0.03 0.10 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 25.00 0.03 0.10 86.21 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 63731.00 76.21 247.47 99.36 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1968.00 2.35 7.64 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 5159.00 6.17 20.03 92.17 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 988.00 22.93 3.84 52.67 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 254.00 5.90 0.99 100.0 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 308.00 7.15 1.20 100.0 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 159.00 3.29 0.62 100.0 RN7SL2-201 misc RNA transverse colon (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 17.00 0.35 0.07 1.74 RN7SL2-201 misc RNA transverse colon (Tissue)