ENCFF381DXM

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR168XPO
Description: Part of ENCODE experiment ENCSR168XPO. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 654.00 47.95 2.54 77.12 SNORD126-201 snoRNA transverse colon (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 14664.00 89.57 56.94 97.06 SNORD124-201 snoRNA transverse colon (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 220.00 15.50 0.85 100.0 SNHG12-201 retained intron transverse colon (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 1348.00 21.68 5.23 100.0 RPL3-212 retained intron transverse colon (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1221.00 19.64 4.74 72.21 RPL3-212 retained intron transverse colon (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 5242.00 97.06 20.35 100.0 SMC1A-204 retained intron transverse colon (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 96027.00 93.20 372.87 99.0 RABGGTB-208 protein coding CDS not defined transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 78.00 3.74 0.30 78.79 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 405.00 19.41 1.57 100.0 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 748.00 35.84 2.90 100.0 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3179.00 74.10 12.34 100.0 RPS8-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 729.00 3.66 2.83 100.0 RPL13-207 retained intron transverse colon (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 18082.00 90.74 70.21 99.82 RPL13-207 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 6720.00 0.79 26.09 87.52 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 128349.00 15.00 498.38 89.6 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 696.00 0.08 2.70 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 680217.00 79.47 2641.27 98.68 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 798.00 0.09 3.10 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1410.00 0.16 5.47 59.85 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 2.00 0.00 0.01 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 699.00 0.08 2.71 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 7897.00 0.92 30.66 74.26 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 921.00 0.11 3.58 24.9 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2950.00 0.34 11.45 42.67 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 229.00 0.03 0.89 21.64 EIF4A2-219 retained intron transverse colon (Tissue)