ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 691.00 0.28 3.13 100.0 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 91.00 0.04 0.41 100.0 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 427.09 0.17 1.93 65.61 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 158.00 0.06 0.71 100.0 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 281.85 0.11 1.28 46.82 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 743.00 0.30 3.36 100.0 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 844.00 18.08 3.82 100.0 SNORD114-9-201 snoRNA stomach (Tissue)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 3417.00 73.18 15.46 100.0 SNORD114-9-201 snoRNA stomach (Tissue)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 1757.00 15.83 7.95 100.0 Y_RNA.234-201 misc RNA stomach (Tissue)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 7.00 0.56 0.03 100.0 RNA5SP141-201 rRNA pseudogene stomach (Tissue)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 160.00 67.23 0.72 100.0 SNORD114-15-201 snoRNA stomach (Tissue)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 42.00 25.93 0.19 100.0 ENST00000364722 snoRNA stomach (Tissue)
ENST00000364830.3 ENST00000364830.3_3_67_+ 3–67 82.00 40.59 0.37 100.0 SNORD113-3-201 snoRNA stomach (Tissue)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 1357.00 65.94 6.14 100.0 SNORD52-201 snoRNA stomach (Tissue)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 907.00 60.51 4.10 99.89 SNORD114-3-201 snoRNA stomach (Tissue)
ENST00000364969.1 ENST00000364969.1_4_62_+ 4–62 11.00 0.73 0.05 100.0 SNORD114-3-201 snoRNA stomach (Tissue)
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 377.00 25.15 1.71 100.0 SNORD114-3-201 snoRNA stomach (Tissue)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 44.00 4.62 0.20 100.0 RNA5SP298-201 rRNA pseudogene stomach (Tissue)
ENST00000365080.1 ENST00000365080.1_3_67_+ 3–67 392.00 75.68 1.77 100.0 SNORD113-9-201 snoRNA stomach (Tissue)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 2215.00 9.43 10.02 100.0 SNORD38A-201 snoRNA stomach (Tissue)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 272.00 1.16 1.23 100.0 SNORD38A-201 snoRNA stomach (Tissue)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 19030.00 80.98 86.09 100.0 SNORD38A-201 snoRNA stomach (Tissue)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 3058.00 89.52 13.83 97.89 SNORD114-20-201 snoRNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 111.00 2.98 0.50 100.0 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 425.00 11.41 1.92 81.57 7SK.1-201 misc RNA stomach (Tissue)