ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 2719.00 14.20 12.30 66.63 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 554.98 2.90 2.51 69.63 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 3253.00 16.99 14.72 63.1 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 349.00 83.10 1.58 100.0 SNORD114-14-201 snoRNA stomach (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 36.00 0.15 0.16 100.0 SNORD104-201 snoRNA stomach (Tissue)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 1503.00 6.37 6.80 100.0 SNORD104-201 snoRNA stomach (Tissue)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 137887.00 62.92 623.78 74.48 RNA5SP358-201 rRNA pseudogene stomach (Tissue)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 65.00 4.13 0.29 59.63 RNA5SP145-201 rRNA pseudogene stomach (Tissue)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 1.00 2.50 0.00 100.0 Y_RNA.105-201 misc RNA stomach (Tissue)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 17.00 5.70 0.08 100.0 RNY4P9-201 misc RNA stomach (Tissue)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 527.00 12.38 2.38 100.0 RNU5B-1-201 snRNA stomach (Tissue)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 46.00 1.08 0.21 100.0 RNU5B-1-201 snRNA stomach (Tissue)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 1434.00 33.68 6.49 100.0 RNU5B-1-201 snRNA stomach (Tissue)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 51.00 4.37 0.23 100.0 RNY4P27-201 misc RNA stomach (Tissue)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 222.00 17.92 1.00 100.0 Y_RNA.136-201 misc RNA stomach (Tissue)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 3386.00 93.82 15.32 99.12 SNORD114-25-201 snoRNA stomach (Tissue)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 631.00 88.87 2.85 100.0 SNORD113-7-201 snoRNA stomach (Tissue)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 63.00 22.99 0.29 100.0 Y_RNA.181-201 misc RNA stomach (Tissue)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 635.28 11.06 2.87 72.6 RNY1-201 misc RNA stomach (Tissue)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 2617.00 45.55 11.84 100.0 RNY1-201 misc RNA stomach (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 53.00 0.92 0.24 100.0 RNY1-201 misc RNA stomach (Tissue)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 215.48 3.75 0.97 33.0 RNY1-201 misc RNA stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 282.00 0.11 1.28 100.0 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 6081.00 2.46 27.51 100.0 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 17840.32 7.21 80.71 37.5 RNA5SP202-201 rRNA pseudogene stomach (Tissue)