ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362283.1 ENST00000362283.1_6_29_+ 6–29 13758.00 58.45 62.24 88.93 MIR30D-201 miRNA stomach (Tissue)
ENST00000362291.1 ENST00000362291.1_52_73_+ 52–73 3728.00 35.84 16.86 96.58 MIR126-201 miRNA stomach (Tissue)
ENST00000362291.1 ENST00000362291.1_15_35_+ 15–35 6379.00 61.32 28.86 100.0 MIR126-201 miRNA stomach (Tissue)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 75.00 45.73 0.34 100.0 MIR374A-201 miRNA stomach (Tissue)
ENST00000362307.1 ENST00000362307.1_8_29_+ 8–29 1404.00 85.56 6.35 100.0 MIR31-201 miRNA stomach (Tissue)
ENST00000362400.1 ENST00000362400.1_79_95_+ 79–95 2889.00 1.16 13.07 52.44 RNA5S12-201 rRNA stomach (Tissue)
ENST00000362400.1 ENST00000362400.1_56_95_+ 56–95 186.31 0.07 0.84 52.33 RNA5S12-201 rRNA stomach (Tissue)
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 212.00 0.09 0.96 84.13 RNA5S12-201 rRNA stomach (Tissue)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 5.00 0.00 0.02 100.0 RNA5S12-201 rRNA stomach (Tissue)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 18.00 0.01 0.08 48.65 RNA5S12-201 rRNA stomach (Tissue)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 48.00 0.02 0.22 100.0 RNA5S12-201 rRNA stomach (Tissue)
ENST00000362400.1 ENST00000362400.1_58_95_+ 58–95 155.32 0.06 0.70 55.67 RNA5S12-201 rRNA stomach (Tissue)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 31.00 0.01 0.14 100.0 RNA5S12-201 rRNA stomach (Tissue)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 5.00 0.00 0.02 38.46 RNA5S12-201 rRNA stomach (Tissue)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 8938.00 3.60 40.43 77.33 RNA5S12-201 rRNA stomach (Tissue)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 261.00 23.66 1.18 100.0 Y_RNA.14-201 misc RNA stomach (Tissue)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 2.00 1.04 0.01 100.0 RNU5E-1-201 snRNA stomach (Tissue)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 7766.00 53.33 35.13 100.0 SNORA31-201 snoRNA stomach (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 70.00 4.44 0.32 100.0 RNA5SP389-201 rRNA pseudogene stomach (Tissue)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 5.00 0.32 0.02 45.45 RNA5SP389-201 rRNA pseudogene stomach (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 2287.00 11.95 10.35 71.0 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 2193.00 11.46 9.92 64.25 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 2719.00 14.20 12.30 66.63 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 554.98 2.90 2.51 69.63 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 3420.00 17.87 15.47 71.24 RNU5A-1-201 snRNA stomach (Tissue)