ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 6.00 0.37 0.03 100.0 SNORD62B-201 snoRNA stomach (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 460.00 28.01 2.08 92.0 SNORD62B-201 snoRNA stomach (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 38.00 88.37 0.17 100.0 MRPL32-203 nonsense mediated decay stomach (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 46.00 55.42 0.21 100.0 ENST00000436739 lncRNA stomach (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 93.00 0.16 0.42 100.0 TMEM107-204 protein coding stomach (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 35462.00 59.39 160.43 83.32 TMEM107-204 protein coding stomach (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2095.00 3.51 9.48 88.28 TMEM107-204 protein coding stomach (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 10.00 0.02 0.05 100.0 TMEM107-204 protein coding stomach (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 114.00 23.90 0.52 100.0 SNHG16-201 lncRNA stomach (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 24238.00 76.04 109.65 94.92 SNORD105B-201 snoRNA stomach (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 203.00 30.57 0.92 49.63 SNORD121B-201 snoRNA stomach (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 2912.00 83.99 13.17 100.0 SNORD127-201 snoRNA stomach (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 17680.00 95.48 79.98 100.0 SNORD42B-201 snoRNA stomach (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 328.00 4.18 1.48 100.0 RNY4P25-201 misc RNA stomach (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 253.00 75.98 1.14 100.0 SNORD121A-201 snoRNA stomach (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 945.00 92.92 4.28 100.0 SNORD126-201 snoRNA stomach (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 2013.00 57.83 9.11 100.0 SNHG12-201 retained intron stomach (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3769.00 96.84 17.05 100.0 SMC1A-204 retained intron stomach (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 7.00 0.93 0.03 100.0 DDX39B-219 retained intron stomach (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 140.00 18.59 0.63 100.0 DDX39B-219 retained intron stomach (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 321.00 42.63 1.45 100.0 DDX39B-219 retained intron stomach (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1843.00 84.12 8.34 100.0 RPS8-206 protein coding CDS not defined stomach (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 236.00 8.89 1.07 100.0 RPL13-207 retained intron stomach (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1286.00 48.44 5.82 100.0 RPL13-207 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 292.00 0.15 1.32 60.21 EIF4A2-219 retained intron stomach (Tissue)