ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 71.00 29.46 0.32 100.0 MIR887-201 miRNA stomach (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 98.00 85.96 0.44 100.0 MIR889-201 miRNA stomach (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 14.00 100.00 0.06 100.0 MIR548K-201 miRNA stomach (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 606.00 69.10 2.74 100.0 MIR320B2-201 miRNA stomach (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 1.00 100.00 0.00 100.0 MIR1271-201 miRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1107.00 5.24 5.01 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 543.00 2.57 2.46 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 17930.00 84.92 81.11 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 173.00 0.82 0.78 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1960.00 66.35 8.87 100.0 SNORD111B-201 snoRNA stomach (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 761.00 3.23 3.44 100.0 RNU2-36P-201 snRNA stomach (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 327.00 1.39 1.48 100.0 RNU2-36P-201 snRNA stomach (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 980.00 2.23 4.43 100.0 SNORD19C-201 snoRNA stomach (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 41445.00 94.46 187.49 98.75 SNORD19C-201 snoRNA stomach (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1162.00 51.92 5.26 100.0 SNORD12B-201 snoRNA stomach (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 162.00 7.24 0.73 100.0 SNORD12B-201 snoRNA stomach (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 5.00 1.27 0.02 100.0 Y_RNA.609-201 misc RNA stomach (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 23.00 28.75 0.10 100.0 Y_RNA.612-201 misc RNA stomach (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 214.00 7.63 0.97 100.0 SNORD71-201 snoRNA stomach (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 129.00 4.60 0.58 100.0 SNORD71-201 snoRNA stomach (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 313895.00 88.49 1420.02 95.98 MIR194-2HG-201 lncRNA stomach (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 36191.00 10.20 163.72 50.29 MIR194-2HG-201 lncRNA stomach (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 5.00 55.56 0.02 100.0 RPS7P15-201 processed pseudogene stomach (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 286.00 17.42 1.29 100.0 SNORD62B-201 snoRNA stomach (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 139.00 8.47 0.63 100.0 SNORD62B-201 snoRNA stomach (Tissue)