ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 86.00 45.50 0.39 100.0 MIR501-201 miRNA stomach (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 853.00 88.95 3.86 100.0 MIR769-201 miRNA stomach (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 69.00 80.23 0.31 100.0 KRTAP19-1-201 protein coding stomach (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 16.00 16.16 0.07 100.0 MIR708-201 miRNA stomach (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 4.00 36.36 0.02 100.0 MIR509-3-201 miRNA stomach (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 1.00 50.00 0.00 100.0 MIR543-201 miRNA stomach (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 5.00 71.43 0.02 100.0 MIR301B-201 miRNA stomach (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 276.00 44.81 1.25 75.82 RNU1-82P-201 snRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 4148.00 36.40 18.77 64.1 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 589.00 5.17 2.66 100.0 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 2.00 0.02 0.01 100.0 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 181.00 1.59 0.82 100.0 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 17.00 15.74 0.08 100.0 U3.17-201 snoRNA stomach (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 2954.00 91.31 13.36 100.0 SNORD17-201 snoRNA stomach (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 36.00 36.00 0.16 100.0 SNORD72-201 snoRNA stomach (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 611.00 74.51 2.76 100.0 SNORD70B-201 snoRNA stomach (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 5518.00 72.04 24.96 92.48 RNY4P18-201 misc RNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 1645.00 2.91 7.44 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 40148.00 70.91 181.62 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 7431.00 13.12 33.62 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 1032.00 1.82 4.67 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 95.00 1.02 0.43 100.0 B4GALNT2-202 protein coding stomach (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 6131.00 65.57 27.74 89.88 B4GALNT2-202 protein coding stomach (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 619.00 87.93 2.80 100.0 NDE1-202 protein coding stomach (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 5.00 100.00 0.02 100.0 MIR450B-201 miRNA stomach (Tissue)