ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 19399.00 67.90 57.76 100.0 SNORD114-22-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 12664.00 87.94 37.71 100.0 SNORD6-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 613.00 4.26 1.83 100.0 SNORD6-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 437.00 4.38 1.30 100.0 RNY3-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 177.00 0.42 0.53 100.0 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 12207.42 29.17 36.35 63.03 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 8951.00 21.39 26.65 99.69 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 1836.00 4.39 5.47 100.0 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 7104.00 16.98 21.15 88.72 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 6676.55 15.96 19.88 34.47 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 801.00 1.91 2.39 100.0 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 6632.00 94.66 19.75 97.53 MIR146B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 127.00 37.57 0.38 100.0 SNHG20-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 1.00 0.33 0.00 100.0 ATP5MK-205 protein coding gastroesophageal sphincter (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 51.00 16.78 0.15 100.0 ATP5MK-205 protein coding gastroesophageal sphincter (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 11.00 5.79 0.03 100.0 LINC01556-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 616.00 36.62 1.83 100.0 ATAD3A-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 10.00 12.50 0.03 50.0 TMC5-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 22.00 50.00 0.07 100.0 ZMYM2-203 protein coding gastroesophageal sphincter (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 91.00 1.28 0.27 100.0 RNVU1-7-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 3232.00 72.27 9.62 100.0 SNORD24-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 425.00 68.77 1.27 100.0 Y_RNA.389-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 156359.00 96.10 465.57 99.83 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 143.00 0.09 0.43 100.0 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 523.00 0.32 1.56 100.0 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)