ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 258.00 17.14 0.77 100.0 Y_RNA.14-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 204.00 19.60 0.61 100.0 SNORD115-34-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 14.00 3.18 0.04 100.0 RNU5E-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 8.00 0.21 0.02 17.02 RNA5SP370-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 48.00 6.68 0.14 100.0 SNORA31-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 53.00 1.42 0.16 27.6 RNA5SP389-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 9.00 0.24 0.03 100.0 RNA5SP389-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 57.00 1.52 0.17 57.58 RNA5SP389-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 135.00 3.61 0.40 100.0 RNA5SP389-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 18.00 0.06 0.05 100.0 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 5004.00 15.79 14.90 75.8 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 279.21 0.88 0.83 58.17 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 2156.00 6.80 6.42 77.17 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 1257.00 3.97 3.74 70.5 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 281.00 0.89 0.84 100.0 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 4139.00 13.06 12.32 84.87 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 1397.00 4.41 4.16 44.18 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 919.25 2.90 2.74 65.47 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 5202.00 16.42 15.49 81.31 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 1256.00 3.96 3.74 69.2 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 220.51 0.70 0.66 64.48 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 796.56 2.51 2.37 39.99 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1189.00 3.75 3.54 25.12 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 2235.00 88.73 6.65 100.0 SNORD114-14-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 51.00 0.23 0.15 100.0 SNORD104-201 snoRNA gastroesophageal sphincter (Tissue)