ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 1487.00 4.38 4.43 100.0 GAS5-377 lncRNA gastroesophageal sphincter (Tissue)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 28730.00 84.57 85.55 100.0 GAS5-377 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 332803.00 97.12 990.94 99.47 ZFAS1-238 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 83.00 0.02 0.25 100.0 ZFAS1-238 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 78.00 0.02 0.23 100.0 ZFAS1-238 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 2617.00 0.76 7.79 100.0 ZFAS1-238 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 6484.00 24.01 19.31 100.0 ZFAS1-242 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 19185.00 71.05 57.12 100.0 ZFAS1-242 lncRNA gastroesophageal sphincter (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 460.00 25.46 1.37 100.0 ENST00000837997 lncRNA gastroesophageal sphincter (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 734.00 40.62 2.19 100.0 ENST00000837997 lncRNA gastroesophageal sphincter (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 7097.00 73.33 21.13 79.24 ENST00000839036 lncRNA gastroesophageal sphincter (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 161.00 14.11 0.48 100.0 ENST00000849527 lncRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 20869.00 86.05 62.14 96.61 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 85.00 0.35 0.25 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 176.00 0.09 0.52 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 1158.00 51.67 3.45 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 155.00 6.92 0.46 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 491.00 25.44 1.46 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 146.00 1.98 0.43 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 1771.00 54.58 5.27 84.25 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 878.00 0.42 2.61 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 862.00 3.40 2.57 89.14 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 17.00 0.07 0.05 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 18055.00 71.27 53.76 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 3913.00 47.66 11.65 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA gastroesophageal sphincter (Tissue)