ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 358148.00 94.13 1066.41 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 60174.00 96.02 179.17 99.23 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 645.00 1.03 1.92 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 21.00 0.03 0.06 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 13.00 0.02 0.04 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 2118.00 81.21 6.31 100.0 B4GALT1-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 1035.00 7.24 3.08 100.0 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 502.00 3.51 1.49 83.25 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 254.00 1.78 0.76 100.0 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 6.00 85.71 0.02 100.0 MIR34BHG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 33920.00 87.66 101.00 90.45 THBS3-AS1-228 lncRNA gastroesophageal sphincter (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 3.00 20.00 0.01 100.0 MIR200CHG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 11866.00 77.33 35.33 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 653.00 4.26 1.94 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 199.00 1.30 0.59 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 274.00 1.79 0.82 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 5.00 50.00 0.01 100.0 MEG8-261 lncRNA gastroesophageal sphincter (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 297.00 23.52 0.88 100.0 NR2F2-AS1-327 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 1104.00 2.56 3.29 38.16 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 10914.00 25.27 32.50 100.0 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 1236.00 2.86 3.68 52.82 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 553.00 1.28 1.65 33.37 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 22594.00 52.31 67.27 100.0 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 25291.00 24.63 75.31 96.38 SNHG26-250 lncRNA gastroesophageal sphincter (Tissue)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 66175.00 64.43 197.04 97.38 SNHG26-250 lncRNA gastroesophageal sphincter (Tissue)