ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362283.1 ENST00000362283.1_6_29_+ 6–29 9895.00 54.57 29.46 91.33 MIR30D-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362283.1 ENST00000362283.1_6_25_+ 6–25 6441.00 35.52 19.18 87.28 MIR30D-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362291.1 ENST00000362291.1_15_35_+ 15–35 4388.00 75.43 13.07 100.0 MIR126-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362291.1 ENST00000362291.1_52_73_+ 52–73 1143.00 19.65 3.40 92.93 MIR126-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 6.00 14.29 0.02 100.0 MIR374A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362307.1 ENST00000362307.1_8_29_+ 8–29 6.00 54.55 0.02 100.0 MIR31-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 154.00 0.04 0.46 52.56 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 57.00 0.02 0.17 100.0 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 517.00 0.15 1.54 36.38 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 64.00 0.02 0.19 100.0 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 577.90 0.17 1.72 53.12 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 39.00 0.01 0.12 82.98 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_20_95_+ 20–95 1166.00 0.34 3.47 51.87 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 100.00 0.03 0.30 72.46 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_58_95_+ 58–95 379.30 0.11 1.13 51.96 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 742.31 0.21 2.21 52.87 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_79_95_+ 79–95 2727.00 0.79 8.12 62.29 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_12_95_+ 12–95 568.00 0.16 1.69 66.43 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_56_95_+ 56–95 584.17 0.17 1.74 49.63 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 793.00 0.23 2.36 66.69 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 19.00 0.01 0.06 100.0 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 2897.00 0.84 8.63 81.61 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 6548.00 1.90 19.50 91.84 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 6771.00 1.96 20.16 80.4 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 201399.00 58.29 599.68 99.71 RNA5S12-201 rRNA gastroesophageal sphincter (Tissue)