ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 206.00 0.03 0.61 100.0 SNORD71-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 641538.00 98.25 1910.22 99.78 SNORD71-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 1339.00 81.25 3.99 91.27 MIR194-2HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 275.00 16.69 0.82 60.84 MIR194-2HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 789.00 11.26 2.35 100.0 LINC01783-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 10.00 66.67 0.03 100.0 RPS7P15-201 processed pseudogene gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1326.00 23.85 3.95 92.6 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 502.00 9.03 1.49 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 1142.00 20.54 3.40 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 6.00 0.11 0.02 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 472.00 8.49 1.41 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 28.00 96.55 0.08 100.0 MRPL32-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 12.00 70.59 0.04 100.0 ENST00000436739 lncRNA gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 14.00 0.45 0.04 51.85 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1159.00 37.35 3.45 89.29 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 106.00 3.42 0.32 100.0 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 746.00 24.04 2.22 100.0 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 225.00 6.01 0.67 100.0 SNHG16-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 3096.00 82.69 9.22 97.7 SNHG16-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 107.00 12.30 0.32 100.0 SNHG14-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 76953.00 88.68 229.13 96.39 SNORD105B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 540.00 43.69 1.61 56.37 SNORD121B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 16.00 0.01 0.05 100.0 SNORD127-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 189789.00 97.71 565.11 99.0 SNORD127-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 21878.00 95.41 65.14 100.0 SNORD42B-201 snoRNA gastroesophageal sphincter (Tissue)