ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 654.00 8.06 1.95 100.0 MT-RNR1-201 Mt rRNA gastroesophageal sphincter (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 198.00 80.16 0.59 100.0 MIR454-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 188.00 62.46 0.56 100.0 MIR501-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 589.00 89.79 1.75 100.0 MIR769-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 602.00 74.60 1.79 100.0 KRTAP19-1-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 9.00 45.00 0.03 100.0 MIR708-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 4.00 100.00 0.01 100.0 MIR509-3-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 8.00 100.00 0.02 100.0 MIR301B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 234.00 43.58 0.70 72.0 RNU1-82P-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 5045.00 22.61 15.02 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 2367.00 10.61 7.05 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 4847.00 21.72 14.43 76.66 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 567.00 2.54 1.69 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 22.00 47.83 0.07 100.0 U3.17-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 2133.00 91.86 6.35 100.0 SNORD17-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 491.00 73.95 1.46 100.0 SNORD72-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 2310.00 65.96 6.88 100.0 SNORD70B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 45416.00 84.63 135.23 94.32 RNY4P18-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 58308.00 86.50 173.62 100.0 SNORD90-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 6761.00 10.03 20.13 68.78 SNORD90-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 34783.00 85.56 103.57 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 2921.00 7.19 8.70 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 1052.00 2.59 3.13 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 314.00 0.77 0.93 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 2171.00 42.63 6.46 46.74 SNORD70-201 snoRNA gastroesophageal sphincter (Tissue)