ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 1.00 100.00 0.00 100.0 MIR653-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 1389.00 72.19 4.14 100.0 MIR140-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 43.00 23.89 0.13 70.49 MIR106B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 11.00 6.11 0.03 100.0 MIR106B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 27524.00 55.49 81.95 98.19 SNORD83A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 19124.00 38.55 56.94 96.73 SNORD83A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 6556.00 86.50 19.52 100.0 SNORD41-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 26.00 2.54 0.08 63.41 MT-TF-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 252.00 24.59 0.75 60.43 MT-TF-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 43.00 4.20 0.13 100.0 MT-TF-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 784.00 23.69 2.33 100.0 MT-TV-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 2260.00 6.10 6.73 100.0 MT-RNR2-201 Mt rRNA gastroesophageal sphincter (Tissue)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 356.00 0.96 1.06 100.0 MT-RNR2-201 Mt rRNA gastroesophageal sphincter (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 5132.00 13.84 15.28 74.63 MT-RNR2-201 Mt rRNA gastroesophageal sphincter (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 12870.00 34.72 38.32 95.07 MT-RNR2-201 Mt rRNA gastroesophageal sphincter (Tissue)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 5.00 0.01 0.01 100.0 MT-RNR2-201 Mt rRNA gastroesophageal sphincter (Tissue)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 42.00 0.11 0.13 100.0 MT-RNR2-201 Mt rRNA gastroesophageal sphincter (Tissue)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 4.00 0.01 0.01 100.0 MT-RNR2-201 Mt rRNA gastroesophageal sphincter (Tissue)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 202.00 19.50 0.60 92.66 MT-TI-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 240.00 23.17 0.71 100.0 MT-TI-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387372.1 ENST00000387372.1_1_32_+ 1–32 4631.49 11.07 13.79 51.97 MT-TQ-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387372.1 ENST00000387372.1_1_55_+ 1–55 33.00 0.08 0.10 100.0 MT-TQ-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 22983.00 54.94 68.43 87.73 MT-TQ-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 3379.96 8.08 10.06 60.8 MT-TQ-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387377.1 ENST00000387377.1_1_31_+ 1–31 453.00 26.73 1.35 73.78 MT-TM-201 Mt tRNA gastroesophageal sphincter (Tissue)