ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 3836.73 6.68 24.63 53.9 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 1197.00 2.08 7.68 100.0 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 4386.00 7.64 28.16 100.0 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 2542.00 4.43 16.32 100.0 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 3184.01 5.54 20.44 44.73 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 3637.00 96.50 23.35 100.0 MIR7974-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000616574.2 ENST00000616574.2_7_27_+ 7–27 1.00 100.00 0.01 100.0 MIR376A1-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 3413.00 18.08 21.91 100.0 U2.3-201 snRNA trophoblast cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 1.00 0.01 0.01 100.0 U2.3-201 snRNA trophoblast cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 32.00 0.17 0.21 100.0 U2.3-201 snRNA trophoblast cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 18.00 0.10 0.12 100.0 U2.3-201 snRNA trophoblast cell (In vitro differentiated cells)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 358.00 5.40 2.30 100.0 U2.6-201 snRNA trophoblast cell (In vitro differentiated cells)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 2.00 0.75 0.01 66.67 ENST00000619323 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 159.00 59.33 1.02 99.38 ENST00000619323 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 291.00 28.23 1.87 100.0 SCARNA4-202 scaRNA trophoblast cell (In vitro differentiated cells)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 6505.00 77.50 41.76 100.0 ENST00000630615 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 55.00 35.48 0.35 100.0 DMRT2-209 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 40.00 25.81 0.26 100.0 DMRT2-209 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 929.00 81.63 5.96 100.0 SNORD98-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 4.00 0.35 0.03 100.0 SNORD98-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 668057.56 27.92 4288.75 29.27 MIR106AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 4715.24 0.20 30.27 48.31 MIR106AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 1248.00 0.05 8.01 100.0 MIR106AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 4449.12 0.19 28.56 45.59 MIR106AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 2.00 33.33 0.01 100.0 MEG8-222 lncRNA trophoblast cell (In vitro differentiated cells)