ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 11.00 0.39 0.07 100.0 MIR133A1HG-202 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 11.00 0.18 0.07 28.21 RPL17-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 8.00 0.13 0.05 5.93 RPL17-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 7.00 0.12 0.04 100.0 RPL17-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 1273.00 21.17 8.17 99.38 RPL17-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 263.00 4.37 1.69 98.13 RPL17-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 50.00 71.43 0.32 100.0 ENST00000582320 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 5.00 7.14 0.03 71.43 ENST00000582320 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 6.00 8.57 0.04 100.0 ENST00000582320 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 351.00 10.95 2.25 100.0 RPL17-214 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 239.61 7.47 1.54 36.03 RPL17-214 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 507.53 15.83 3.26 66.96 RPL17-214 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 5957.00 12.79 38.24 100.0 SNORD43-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 29825.00 64.02 191.47 99.84 SNORD43-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 1343.00 2.88 8.62 100.0 SNORD43-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 2134.00 92.10 13.70 100.0 MIR151B-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 6.00 1.05 0.04 100.0 SNORD92-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 51964.00 68.94 333.59 100.0 NSRP1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 17436.00 23.13 111.93 91.51 NSRP1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1890.00 7.54 12.13 79.61 MIR23AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 4519.00 18.03 29.01 57.88 MIR23AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 9243.00 36.89 59.34 95.1 MIR23AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1063.00 4.24 6.82 48.47 MIR23AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 44.00 33.08 0.28 100.0 ODAD3-204 nonsense mediated decay trophoblast cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 4832.00 1.47 31.02 100.0 VMP1-217 retained intron trophoblast cell (In vitro differentiated cells)