ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 1649.00 42.53 10.59 97.52 ENST00000565336 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 314.00 8.10 2.02 96.02 ENST00000565336 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1899.00 45.35 12.19 100.0 RBMX-210 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 629.00 15.02 4.04 100.0 RBMX-210 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 61.00 1.46 0.39 98.39 RBMX-210 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 36.00 1.39 0.23 100.0 RPL4-214 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 99.90 4.79 0.64 59.46 POLG-DT-202 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 54.40 2.61 0.35 33.37 POLG-DT-202 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 4868.00 23.53 31.25 100.0 ENST00000570843 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 191.00 54.73 1.23 100.0 MIR497HG-207 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 997869.00 99.78 6406.05 99.94 MIR22HG-212 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 37.00 4.89 0.24 17.62 SNORD53B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 16.00 2.12 0.10 61.54 SNORD53B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 173.00 22.88 1.11 82.38 SNORD53B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 696.00 88.66 4.47 100.0 ENST00000578036 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 163.00 10.32 1.05 100.0 RPL23A-207 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 10021.00 92.71 64.33 100.0 MIR744-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 129.00 70.49 0.83 100.0 MIR378C-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 9.00 16.36 0.06 33.33 MIR142HG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 15.00 27.27 0.10 51.72 MIR142HG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 1.00 1.82 0.01 100.0 MIR142HG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 2653.00 45.71 17.03 74.61 RPL23A-208 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 1878.00 32.36 12.06 89.34 RPL23A-208 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 4.99 0.09 0.03 83.14 RPL23A-208 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 2.25 0.04 0.01 56.2 RPL23A-208 retained intron trophoblast cell (In vitro differentiated cells)