ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 17.00 0.21 0.11 65.38 WDR74-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 2.00 0.02 0.01 100.0 WDR74-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 1161.00 14.39 7.45 100.0 WDR74-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 6.00 0.07 0.04 100.0 WDR74-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 3.00 0.33 0.02 100.0 HSPA8-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 232.00 3.13 1.49 100.0 SCARNA9-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 612.00 9.89 3.93 100.0 TAF1D-215 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 3.00 0.05 0.02 100.0 TAF1D-215 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 12.00 1.99 0.08 100.0 HSPA8-215 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 633970.00 89.29 4069.92 90.25 ENST00000548801 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 58.00 3.05 0.37 100.0 ENST00000554988 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 147.00 7.74 0.94 100.0 ENST00000554988 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 6.00 0.07 0.04 100.0 SNHG14-220 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 9.00 0.11 0.06 100.0 SNHG14-220 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 528.00 6.49 3.39 100.0 SNHG14-220 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 1125.00 13.82 7.22 100.0 SNHG14-220 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 137.00 97.86 0.88 100.0 TEKT4P2-201 transcribed unprocessed pseudogene trophoblast cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 877.00 11.98 5.63 100.0 RPL4-202 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 130.00 1.78 0.83 94.2 RPL4-202 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 2422.00 33.07 15.55 100.0 RPL4-202 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 16.00 0.22 0.10 100.0 RPL4-202 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 853.00 11.65 5.48 100.0 RPL4-202 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 10505.00 15.51 67.44 100.0 ENST00000563103 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 47.00 0.42 0.30 100.0 RPL4-207 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 86.00 0.77 0.55 100.0 RPL4-207 retained intron trophoblast cell (In vitro differentiated cells)