ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 28429.00 83.85 117.56 100.0 SNORD38A-201 snoRNA vagina (Tissue)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 6781.00 88.66 28.04 97.91 SNORD114-20-201 snoRNA vagina (Tissue)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 764.00 23.44 3.16 85.17 7SK.1-201 misc RNA vagina (Tissue)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 519.00 15.92 2.15 67.58 7SK.1-201 misc RNA vagina (Tissue)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 455.00 13.96 1.88 77.38 7SK.1-201 misc RNA vagina (Tissue)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 3.00 0.09 0.01 100.0 7SK.1-201 misc RNA vagina (Tissue)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 53.00 1.63 0.22 100.0 7SK.1-201 misc RNA vagina (Tissue)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 206.00 62.61 0.85 100.0 RNA5SP77-201 rRNA pseudogene vagina (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 15899.00 52.43 65.75 97.59 SNORD114-22-201 snoRNA vagina (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 13236.00 43.65 54.74 100.0 SNORD114-22-201 snoRNA vagina (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 4792.00 82.99 19.82 100.0 SNORD6-201 snoRNA vagina (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 176.00 3.05 0.73 100.0 SNORD6-201 snoRNA vagina (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 7667.00 34.70 31.71 97.12 SNORD82-201 snoRNA vagina (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 1058.00 4.79 4.38 100.0 SNORD82-201 snoRNA vagina (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 258.00 1.17 1.07 100.0 SNORD82-201 snoRNA vagina (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 812.00 3.68 3.36 100.0 SNORD82-201 snoRNA vagina (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 2074.00 9.39 8.58 89.24 SNORD82-201 snoRNA vagina (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 2128.67 9.63 8.80 32.39 SNORD82-201 snoRNA vagina (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 4348.37 19.68 17.98 66.17 SNORD82-201 snoRNA vagina (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 4929.00 95.62 20.38 97.45 MIR146B-201 miRNA vagina (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 1026.00 68.81 4.24 100.0 SNHG20-201 lncRNA vagina (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 20.00 20.83 0.08 100.0 ATP5MK-205 protein coding vagina (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 22.00 24.18 0.09 100.0 ATAD3A-202 protein coding vagina (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 2.00 2.17 0.01 6.45 TMC5-202 protein coding vagina (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 45.00 91.84 0.19 100.0 ZMYM2-203 protein coding vagina (Tissue)