ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 4756.65 26.33 19.67 30.28 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 11886.46 65.80 49.15 71.49 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 430.00 2.38 1.78 89.4 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 388392.00 97.48 1606.14 98.34 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 314.00 32.85 1.30 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 11230.00 46.30 46.44 62.06 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 32.00 0.00 0.13 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 60.00 0.01 0.25 67.42 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 3541.00 74.85 14.64 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 26.00 0.92 0.11 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 1383541.00 99.78 5721.43 99.97 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 220.00 0.56 0.91 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 32399.00 82.04 133.98 93.16 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 753.00 87.56 3.11 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 302.00 28.46 1.25 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 811.00 46.37 3.35 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 92396.00 99.17 382.09 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 8941.00 98.10 36.97 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 2542.00 28.36 10.51 92.24 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 29.00 0.32 0.12 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 16.00 0.00 0.07 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 333.00 33.23 1.38 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 57.00 1.05 0.24 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 574.00 6.41 2.37 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 3644.00 40.67 15.07 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA vagina (Tissue)