ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 118.00 0.37 0.49 100.0 ENST00000651540 lncRNA vagina (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 732.00 2.32 3.03 60.35 ENST00000651540 lncRNA vagina (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 13.00 0.04 0.05 100.0 ENST00000651540 lncRNA vagina (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 40.00 0.13 0.17 100.0 ENST00000651540 lncRNA vagina (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 139.00 0.44 0.57 100.0 ENST00000651540 lncRNA vagina (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 2254.00 7.16 9.32 34.67 ENST00000651540 lncRNA vagina (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 588.00 1.87 2.43 100.0 ENST00000651540 lncRNA vagina (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 11571.00 36.75 47.85 88.72 ENST00000651540 lncRNA vagina (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 1814.00 0.74 7.50 100.0 MIRLET7A1HG-203 lncRNA vagina (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 3029.00 94.80 12.53 100.0 MEG8-225 lncRNA vagina (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 1431.00 38.18 5.92 100.0 SNHG29-232 lncRNA vagina (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 705.00 18.81 2.92 100.0 SNHG29-232 lncRNA vagina (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 800.00 21.34 3.31 100.0 SNHG29-232 lncRNA vagina (Tissue)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 6.00 0.16 0.02 100.0 SNHG29-232 lncRNA vagina (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 4.00 0.11 0.02 100.0 SNHG29-232 lncRNA vagina (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 95.00 2.59 0.39 100.0 SNHG14-234 lncRNA vagina (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 19.00 0.52 0.08 100.0 SNHG14-234 lncRNA vagina (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 3.00 0.03 0.01 0.14 ENST00000655317 lncRNA vagina (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 2303.00 19.77 9.52 100.0 ENST00000655317 lncRNA vagina (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 4794.00 41.15 19.82 85.08 ENST00000655317 lncRNA vagina (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 1598.00 0.77 6.61 59.49 LINC01962-202 lncRNA vagina (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 205075.00 98.33 848.06 100.0 LINC01962-202 lncRNA vagina (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 178.00 0.09 0.74 100.0 LINC01962-202 lncRNA vagina (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 17453.00 93.34 72.17 100.0 MEG8-228 lncRNA vagina (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 506.00 13.60 2.09 100.0 LIMD1-AS1-204 lncRNA vagina (Tissue)