ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 478.00 0.03 1.98 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 236.00 0.01 0.98 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 2457.00 0.15 10.16 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 3.00 0.00 0.01 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 500.00 0.03 2.07 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1443.00 0.09 5.97 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 6964.00 0.43 28.80 82.76 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 3918.00 0.24 16.20 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 103.00 0.01 0.43 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 151.00 0.01 0.62 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 2435.00 0.15 10.07 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 818049.00 50.73 3382.92 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 1.00 0.00 0.00 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 98.00 25.00 0.41 100.0 FTX-219 lncRNA vagina (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 149.00 38.01 0.62 95.51 FTX-219 lncRNA vagina (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 82.00 1.21 0.34 25.79 CTC1-214 protein coding vagina (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 100.00 1.47 0.41 91.74 CTC1-214 protein coding vagina (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 1854.00 27.33 7.67 86.23 CTC1-214 protein coding vagina (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 236.00 3.48 0.98 74.21 CTC1-214 protein coding vagina (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 712.00 10.50 2.94 62.57 CTC1-214 protein coding vagina (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 1836.00 27.06 7.59 100.0 CTC1-214 protein coding vagina (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 136.00 2.00 0.56 100.0 CTC1-214 protein coding vagina (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 19.00 0.28 0.08 100.0 CTC1-214 protein coding vagina (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 213.00 0.68 0.88 66.36 ENST00000651540 lncRNA vagina (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 8578.00 27.24 35.47 92.57 ENST00000651540 lncRNA vagina (Tissue)