ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 761.00 1.76 7.88 56.66 RNU5A-1-201 snRNA OCI-LY7 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 137.00 0.32 1.42 100.0 RNU5A-1-201 snRNA OCI-LY7 (Cell line)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 1392.00 3.21 14.42 100.0 RNU5A-1-201 snRNA OCI-LY7 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 1866.92 4.31 19.34 66.82 RNU5A-1-201 snRNA OCI-LY7 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 957.38 2.21 9.92 40.67 RNU5A-1-201 snRNA OCI-LY7 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 38.00 1.83 0.39 100.0 SNORD104-201 snoRNA OCI-LY7 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 78.00 3.76 0.81 100.0 SNORD104-201 snoRNA OCI-LY7 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 1830.00 24.33 18.96 88.71 RNA5SP358-201 rRNA pseudogene OCI-LY7 (Cell line)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 25.00 0.04 0.26 78.12 RNA5SP145-201 rRNA pseudogene OCI-LY7 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 3.00 0.49 0.03 100.0 Y_RNA.105-201 misc RNA OCI-LY7 (Cell line)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 31.00 9.39 0.32 100.0 RNY4P9-201 misc RNA OCI-LY7 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 1008.00 4.43 10.44 100.0 RNU5B-1-201 snRNA OCI-LY7 (Cell line)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 50.00 0.22 0.52 100.0 RNU5B-1-201 snRNA OCI-LY7 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 325.00 1.43 3.37 100.0 RNU5B-1-201 snRNA OCI-LY7 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 297.00 1.31 3.08 49.17 RNU5B-1-201 snRNA OCI-LY7 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 187.00 0.82 1.94 100.0 RNU5B-1-201 snRNA OCI-LY7 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 12126.00 53.34 125.64 100.0 RNU5B-1-201 snRNA OCI-LY7 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 738.00 43.06 7.65 99.06 RNY4P27-201 misc RNA OCI-LY7 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 30.00 1.75 0.31 81.08 RNY4P27-201 misc RNA OCI-LY7 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 99.00 6.11 1.03 100.0 Y_RNA.136-201 misc RNA OCI-LY7 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 42.00 12.43 0.44 100.0 Y_RNA.181-201 misc RNA OCI-LY7 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 29.00 0.22 0.30 100.0 RNY1-201 misc RNA OCI-LY7 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 377.05 2.89 3.91 8.32 RNY1-201 misc RNA OCI-LY7 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 3152.72 24.20 32.67 70.53 RNY1-201 misc RNA OCI-LY7 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 126.00 0.97 1.31 100.0 RNY1-201 misc RNA OCI-LY7 (Cell line)