ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 1627.00 0.32 16.86 98.97 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 106.26 0.02 1.10 56.82 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 873.00 0.17 9.05 90.84 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 132598.00 25.88 1373.85 96.51 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 92.00 0.02 0.95 48.17 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 27501.00 5.37 284.94 99.67 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 755.00 0.15 7.82 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 106050.00 20.70 1098.79 98.33 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 6.00 0.00 0.06 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 136.00 0.03 1.41 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 2101.00 0.41 21.77 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 292.00 0.06 3.03 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 92.00 0.02 0.95 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 77.00 0.02 0.80 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 1260.00 0.25 13.05 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 361.00 0.07 3.74 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 565.00 0.11 5.85 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 176640.00 34.47 1830.17 98.4 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 143.00 0.03 1.48 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 9200.00 1.80 95.32 93.13 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 249.00 0.05 2.58 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 60.00 0.01 0.62 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 10436.00 2.04 108.13 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 441.00 0.09 4.57 71.71 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 82.75 0.02 0.86 44.25 SNHG1-248 lncRNA OCI-LY7 (Cell line)