ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 142445.00 91.56 1475.88 100.0 SNHG29-232 lncRNA OCI-LY7 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 17.00 0.01 0.18 100.0 SNHG29-232 lncRNA OCI-LY7 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 136.00 0.09 1.41 100.0 SNHG29-232 lncRNA OCI-LY7 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 3.00 0.00 0.03 100.0 SNHG29-232 lncRNA OCI-LY7 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 5886.00 3.78 60.99 100.0 SNHG29-232 lncRNA OCI-LY7 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 3132.00 2.01 32.45 100.0 SNHG29-232 lncRNA OCI-LY7 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 1.00 16.67 0.01 100.0 SNHG14-234 lncRNA OCI-LY7 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 180.00 7.55 1.86 34.03 ENST00000655317 lncRNA OCI-LY7 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 528.00 22.15 5.47 100.0 ENST00000655317 lncRNA OCI-LY7 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 624.00 26.17 6.47 72.9 ENST00000655317 lncRNA OCI-LY7 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 25.00 1.05 0.26 100.0 ENST00000655317 lncRNA OCI-LY7 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 56.00 4.00 0.58 53.33 LINC01962-202 lncRNA OCI-LY7 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 296.00 21.13 3.07 100.0 LINC01962-202 lncRNA OCI-LY7 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 106.00 7.57 1.10 100.0 LINC01962-202 lncRNA OCI-LY7 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 1.00 100.00 0.01 100.0 SNHG14-241 lncRNA OCI-LY7 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 2.00 0.06 0.02 100.0 LIMD1-AS1-204 lncRNA OCI-LY7 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 9.00 0.26 0.09 100.0 LIMD1-AS1-204 lncRNA OCI-LY7 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 635.00 18.10 6.58 74.53 LIMD1-AS1-204 lncRNA OCI-LY7 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 2.00 66.67 0.02 100.0 MIR99AHG-262 lncRNA OCI-LY7 (Cell line)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 1.00 14.29 0.01 100.0 SNHG14-270 lncRNA OCI-LY7 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 4.00 8.51 0.04 100.0 MIR9-2HG-225 lncRNA OCI-LY7 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 3062.00 87.21 31.73 100.0 SNHG17-252 lncRNA OCI-LY7 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 227.00 2.66 2.35 100.0 ENST00000666735 lncRNA OCI-LY7 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 865.00 10.15 8.96 100.0 ENST00000666735 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 296.00 0.06 3.07 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)