ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 5446.00 66.90 56.43 96.2 HSPA9-211 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 37.00 0.01 0.38 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 3682.00 1.46 38.15 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 120.00 0.05 1.24 67.04 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 7595.00 3.02 78.69 99.54 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 93.00 0.04 0.96 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 172.00 0.07 1.78 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 344.00 0.14 3.56 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 159168.00 63.28 1649.15 99.71 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 312.00 0.12 3.23 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2566.00 1.02 26.59 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1876.00 0.75 19.44 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1782.00 0.71 18.46 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 3916.00 1.56 40.57 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 82.00 0.03 0.85 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 75.00 0.03 0.78 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 250.00 0.10 2.59 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 3102.00 1.23 32.14 69.91 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 1840.00 0.73 19.06 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1849.00 0.74 19.16 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 1300.00 0.52 13.47 99.62 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 30078.00 11.96 311.64 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 116.00 0.05 1.20 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 2008.00 0.80 20.80 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 10640.00 4.23 110.24 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)