ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1.00 25.00 0.01 100.0 CARMN-209 lncRNA OCI-LY7 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2297.00 42.30 23.80 100.0 ENST00000602478 lncRNA OCI-LY7 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 6.00 9.38 0.06 100.0 PPFIA1P1-201 processed pseudogene OCI-LY7 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 6.00 85.71 0.06 100.0 MIR98-201 miRNA OCI-LY7 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 21.00 47.73 0.22 100.0 MIR15A-201 miRNA OCI-LY7 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 11.00 9.09 0.11 100.0 SNHG21-206 retained intron OCI-LY7 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 71.00 36.22 0.74 100.0 SNORD11B-201 snoRNA OCI-LY7 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1859.00 70.50 19.26 100.0 SNORD91B-201 snoRNA OCI-LY7 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 8080.00 74.19 83.72 91.62 SNORD91A-201 snoRNA OCI-LY7 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 826.00 46.46 8.56 97.98 MIR486-1-201 miRNA OCI-LY7 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 506.00 2.86 5.24 27.32 NOP56-219 retained intron OCI-LY7 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 584.00 3.30 6.05 100.0 NOP56-219 retained intron OCI-LY7 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 366.00 2.07 3.79 100.0 NOP56-219 retained intron OCI-LY7 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 12275.00 69.26 127.18 98.82 NOP56-219 retained intron OCI-LY7 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 431.00 0.66 4.47 40.02 RNA5-8SN2-201 rRNA OCI-LY7 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 87.01 0.13 0.90 48.34 RNA5-8SN2-201 rRNA OCI-LY7 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 1752.00 2.67 18.15 100.0 RNA5-8SN2-201 rRNA OCI-LY7 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 217.00 0.33 2.25 100.0 RNA5-8SN2-201 rRNA OCI-LY7 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 1003.00 1.53 10.39 100.0 RNA5-8SN2-201 rRNA OCI-LY7 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1069.00 1.63 11.08 71.27 RNA5-8SN2-201 rRNA OCI-LY7 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 102.21 0.16 1.06 56.78 RNA5-8SN2-201 rRNA OCI-LY7 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 10.00 90.91 0.10 100.0 MIR7974-201 miRNA OCI-LY7 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 629.00 0.10 6.52 100.0 U2.3-201 snRNA OCI-LY7 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 9754.24 1.61 101.06 54.0 U2.3-201 snRNA OCI-LY7 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 410723.00 67.70 4255.52 99.49 U2.3-201 snRNA OCI-LY7 (Cell line)