ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 3874.33 51.71 40.14 65.22 RPL17-214 retained intron OCI-LY7 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 62.00 0.02 0.64 100.0 SNORD43-201 snoRNA OCI-LY7 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 371802.00 98.75 3852.26 99.76 SNORD43-201 snoRNA OCI-LY7 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 180.00 0.05 1.86 100.0 SNORD43-201 snoRNA OCI-LY7 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 3.00 50.00 0.03 100.0 MIR151B-201 miRNA OCI-LY7 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 540.00 3.93 5.59 100.0 SNORD3A-201 snoRNA OCI-LY7 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1277.00 57.14 13.23 100.0 SNORD92-201 snoRNA OCI-LY7 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 530.00 29.40 5.49 100.0 NSRP1-214 protein coding OCI-LY7 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 836.00 46.37 8.66 79.69 NSRP1-214 protein coding OCI-LY7 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 25.00 24.27 0.26 100.0 MIR23AHG-201 lncRNA OCI-LY7 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 3.00 2.91 0.03 100.0 MIR23AHG-201 lncRNA OCI-LY7 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 13.00 12.62 0.13 86.67 MIR23AHG-201 lncRNA OCI-LY7 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1.00 0.97 0.01 100.0 MIR23AHG-201 lncRNA OCI-LY7 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 32.00 58.18 0.33 100.0 ODAD3-204 nonsense mediated decay OCI-LY7 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 29.00 5.46 0.30 100.0 VMP1-217 retained intron OCI-LY7 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 32.00 6.03 0.33 100.0 VMP1-217 retained intron OCI-LY7 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 321.00 60.45 3.33 75.71 VMP1-217 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1740.00 0.17 18.03 100.0 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 408263.50 39.53 4230.04 47.6 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 605262.21 58.60 6271.15 61.72 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 27388.00 2.65 283.77 86.86 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 701.00 0.07 7.26 100.0 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 6.00 0.00 0.06 100.0 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 125.00 17.58 1.30 100.0 RPS11-206 retained intron OCI-LY7 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 176.00 24.75 1.82 100.0 RPS11-206 retained intron OCI-LY7 (Cell line)