ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 40.00 1.12 0.41 100.0 POLG-DT-202 lncRNA OCI-LY7 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 149.00 25.51 1.54 100.0 ENST00000570843 lncRNA OCI-LY7 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 121.00 90.98 1.25 96.03 MIR22HG-212 lncRNA OCI-LY7 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 75.00 0.34 0.78 13.56 SNORD53B-201 snoRNA OCI-LY7 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 14624.00 66.08 151.52 70.6 SNORD53B-201 snoRNA OCI-LY7 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 478.00 2.16 4.95 86.44 SNORD53B-201 snoRNA OCI-LY7 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 97.00 81.51 1.01 100.0 ENST00000578036 lncRNA OCI-LY7 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 4800.00 87.82 49.73 100.0 RPL23A-207 protein coding OCI-LY7 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2.00 50.00 0.02 100.0 MIR744-201 miRNA OCI-LY7 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 25.00 80.65 0.26 100.0 MIR378C-201 miRNA OCI-LY7 (Cell line)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 2315.00 55.72 23.99 75.58 MIR142HG-201 lncRNA OCI-LY7 (Cell line)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 8.00 0.19 0.08 100.0 MIR142HG-201 lncRNA OCI-LY7 (Cell line)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 231.00 5.56 2.39 14.31 MIR142HG-201 lncRNA OCI-LY7 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 403.00 3.46 4.18 100.0 SNORD3C-201 snoRNA OCI-LY7 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 13.30 0.03 0.14 63.34 RPL23A-208 retained intron OCI-LY7 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 5.99 0.02 0.06 35.26 RPL23A-208 retained intron OCI-LY7 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 22724.00 57.95 235.44 68.43 RPL23A-208 retained intron OCI-LY7 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 15666.00 39.95 162.32 85.32 RPL23A-208 retained intron OCI-LY7 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 111.00 0.24 1.15 17.34 RPL17-211 retained intron OCI-LY7 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 258.00 0.56 2.67 5.74 RPL17-211 retained intron OCI-LY7 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 763.00 1.67 7.91 100.0 RPL17-211 retained intron OCI-LY7 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 35571.00 77.70 368.55 99.49 RPL17-211 retained intron OCI-LY7 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 5929.00 12.95 61.43 99.16 RPL17-211 retained intron OCI-LY7 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 391.00 5.22 4.05 100.0 RPL17-214 retained intron OCI-LY7 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 1779.51 23.75 18.44 35.41 RPL17-214 retained intron OCI-LY7 (Cell line)