ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 104.00 0.63 0.12 100.0 ENST00000771298 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 51.00 0.31 0.06 100.0 ENST00000771298 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 8563.00 52.09 10.05 85.86 ENST00000771298 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 226.00 1.37 0.27 100.0 ENST00000771298 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 6011.00 61.52 7.06 100.0 ENST00000772672 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 12.00 0.12 0.01 100.0 ENST00000772672 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 247.00 2.53 0.29 100.0 ENST00000772672 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 173.00 29.12 0.20 100.0 ENST00000773843 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 160.00 0.01 0.19 100.0 SNHG12-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 1324662.00 57.02 1555.15 93.8 SNHG12-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 992870.00 42.74 1165.63 98.11 SNHG12-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 6523.00 0.20 7.66 100.0 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 2621559.00 80.45 3077.71 80.96 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 308.00 0.01 0.36 100.0 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 259.27 0.01 0.30 53.9 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 295.21 0.01 0.35 50.81 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 301.46 0.01 0.35 32.17 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 2247.00 0.07 2.64 85.8 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 353.00 0.01 0.41 100.0 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 395.00 51.91 0.46 100.0 ENST00000778783 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 154.00 88.51 0.18 95.65 MIR155HG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000784740.1 ENST00000784740.1_245_265_+ 245–265 3.00 100.00 0.00 100.0 ENST00000784740 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 3104.00 41.76 3.64 100.0 ENST00000785178 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 437.00 4.99 0.51 35.5 ENST00000786284 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 2599.00 29.65 3.05 100.0 ENST00000786284 lncRNA smooth muscle cell (In vitro differentiated cells)