ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 176466.00 95.85 207.17 98.9 SNHG32-227 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 2112.00 1.15 2.48 100.0 SNHG32-227 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 292.00 0.16 0.34 100.0 SNHG32-227 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 225.00 0.12 0.26 100.0 SNHG32-227 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 410.00 29.54 0.48 100.0 B4GALT1-203 nonsense mediated decay smooth muscle cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 250.00 3.99 0.29 100.0 ENST00000722183 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 312.00 4.97 0.37 85.48 ENST00000722183 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 401.00 6.39 0.47 100.0 ENST00000722183 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 2319.00 90.27 2.72 100.0 MIR34BHG-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 4933.00 73.08 5.79 81.22 THBS3-AS1-228 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 603.00 52.03 0.71 100.0 MIR200CHG-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 174.00 15.01 0.20 100.0 MIR200CHG-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 34925.00 80.19 41.00 100.0 SNHG16-266 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 241.00 0.55 0.28 100.0 SNHG16-266 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 159.00 0.37 0.19 100.0 SNHG16-266 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 75.00 0.17 0.09 100.0 SNHG16-266 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 30.00 63.83 0.04 100.0 MEG8-261 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 155.00 31.50 0.18 100.0 NR2F2-AS1-327 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 5471.00 26.56 6.42 100.0 ENST00000747675 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 446.00 2.16 0.52 40.99 ENST00000747675 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 304.00 1.48 0.36 40.53 ENST00000747675 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 338.00 1.64 0.40 43.11 ENST00000747675 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 1504.00 7.30 1.77 100.0 ENST00000747675 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 5030.00 8.03 5.91 85.81 SNHG26-250 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 48050.00 76.69 56.41 94.58 SNHG26-250 lncRNA smooth muscle cell (In vitro differentiated cells)