ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 103801.00 77.16 121.86 93.74 SNHG14-336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 25653.00 19.07 30.12 36.13 SNHG14-336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 59209.00 90.03 69.51 99.16 SNHG14-341 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 98.00 5.19 0.12 100.0 NCL-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 12.00 0.77 0.01 100.0 NCL-216 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 1881.00 58.76 2.21 100.0 FMN2-209 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 930.00 14.59 1.09 100.0 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 106.00 1.66 0.12 45.69 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 864.00 13.55 1.01 100.0 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 408.00 6.40 0.48 100.0 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 126.00 1.98 0.15 54.31 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 366.00 5.74 0.43 100.0 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 198.00 3.27 0.23 100.0 SNHG10-212 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 152904.88 56.19 179.51 57.32 SNHG19-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 113302.70 41.64 133.02 55.06 SNHG19-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 48.48 0.02 0.06 59.86 SNHG19-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 20.89 0.01 0.02 72.05 SNHG19-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 2850.00 10.56 3.35 86.78 MIR222HG-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 20746.00 76.86 24.36 100.0 MIR222HG-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 676.00 2.50 0.79 100.0 MIR222HG-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 5.00 2.49 0.01 100.0 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 5.67 2.82 0.01 29.84 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 11.40 5.67 0.01 63.34 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 48.00 23.88 0.06 100.0 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 40.00 19.90 0.05 97.56 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)