ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 393.00 0.01 0.46 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 793.00 0.01 0.93 49.32 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 956.00 0.02 1.12 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 1013.00 0.02 1.19 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 8684.00 0.14 10.20 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 196037.00 36.10 230.15 100.0 SNHG14-315 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 171965.00 31.67 201.89 97.6 SNHG14-315 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 138692.00 25.54 162.82 94.64 SNHG14-315 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 2804.00 0.16 3.29 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 674092.00 38.75 791.38 43.73 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 995.00 0.06 1.17 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 371.00 0.02 0.44 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 974468.76 56.01 1144.03 58.69 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 11744.00 0.68 13.79 92.33 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 103.00 0.01 0.12 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 4811.00 0.28 5.65 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 3327.00 0.19 3.91 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 20.00 0.00 0.02 71.43 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 24637.00 1.42 28.92 95.31 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 3172.00 13.58 3.72 92.48 SNHG14-323 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 41.00 0.07 0.05 37.96 MEG8-251 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 53774.00 85.87 63.13 96.69 MEG8-251 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 84.00 0.13 0.10 67.2 MEG8-251 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 2655.00 4.24 3.12 59.85 MEG8-251 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 10.00 0.02 0.01 100.0 MEG8-251 lncRNA smooth muscle cell (In vitro differentiated cells)